RnoEX6054568 @ rn6
Exon Skipping
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:4915415-4919838:-
Coord C1 exon
chr16:4919763-4919838
Coord A exon
chr16:4916936-4916988
Coord C2 exon
chr16:4915415-4915470
Length
53 bp
Sequences
Splice sites
3' ss Seq
GAGTGAATTCTTCCCTTCAGCCC
3' ss Score
5.51
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
AATAACCTTGTATGACTACCAAGCCATGTGTAGAGCCAACAAGGAGAGTAGTGACAGTGCCCACGGACTCCTGGAC
Seq A exon
CCCTATAAGGCCTTCCTCTCTGCAGCCAAGTGGATAGTGACGGAACTTGTCTT
Seq C2 exon
GTTCCTGGTGGAGTTTAACCTTTGCAGTTGGTGGCACTCTGACATGACAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287-'53-59,'53-58,54-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAACCTTGTATGACTACCAAGCCA
R:
CTTTAGCTGTCATGTCAGAGTGC
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]