GgaEX1012529 @ galGal3
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
NA
Coordinates
chr12:7934287-7939267:+
Coord C1 exon
chr12:7934287-7934362
Coord A exon
chr12:7937569-7937621
Coord C2 exon
chr12:7939212-7939267
Length
53 bp
Sequences
Splice sites
3' ss Seq
AATGAATTCCTTCTCTTCAGCCT
3' ss Score
5.37
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
AATTACACTTTATGACTACCAGGCCATGTGTAGAACAAACAAAGAGAGTAGCGACAGTGCCCATAGCTTACTGGAC
Seq A exon
CCTTATAATGCCTTCTTTGCTGCAGTAAAATGGATTATGACAGAGCTTGTCTT
Seq C2 exon
GTTCCTTGTGGAGTTTAATCTGTGCAGTTGGTGGCACTCTGATCTAACAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-'31-35,'31-34,32-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTACACTTTATGACTACCAGGCCA
R:
CTTTTGCTGTTAGATCAGAGTGCC
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]