BtaEX6094901 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49084102-49086021:-
Coord C1 exon
chr22:49085939-49086021
Coord A exon
chr22:49084719-49084860
Coord C2 exon
chr22:49084102-49084257
Length
142 bp
Sequences
Splice sites
3' ss Seq
CCCATCCCCGCTCCATCCAGATG
3' ss Score
8.32
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAGCGGATTGTGAAGATCATGGGCGACTACCAGGTCATGGATGAATTCCTTTACAACCTCAGCACCGAAGACTTCAATGACAA
Seq A exon
ATGGGCTGCCAGCAACTGGCCTACTAAGATCCTTGGGCAGATAGAGCTGGTGCGACAGCAACACTTGGAAGATGAGGAGAAGTTCCGCAAAATCCAGCTTATGGATCAGAACAACTTCCAGGAGAAGCTGGAAGGGCTGCAG
Seq C2 exon
CTGGTGGTAGCTGGCTTCTCCACCCACGTGGAGATTCTGCGTGCGCATGAAATCGCCAATGAGGTGCGGCGGGTCAAGAAGCAGCTGAAGGACTGCCAGCAGCTGGCGATGCTCTACAACAACCGCGAACGCATCTTTGGCTTGCCGATCACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0240317=Seryl_tRNA_N=PD(19.0=67.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGATTGTGAAGATCATGGG
R:
GGTGATCGGCAAGCCAAAGAT
Band lengths:
235-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]