MmuEX6040518 @ mm10
Exon Skipping
Gene
ENSMUSG00000019027 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:31301752-31303357:-
Coord C1 exon
chr14:31303275-31303357
Coord A exon
chr14:31302295-31302436
Coord C2 exon
chr14:31301752-31301907
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTGATCCTCTTTCCCGCCAGATG
3' ss Score
11.6
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GAGCGGATTGTGAAGGTCATGTCTGACTATGAGGTCATGGATGAATTCTTCTACAACCTCACCACAGACGACTTCAATGACAA
Seq A exon
ATGGGCTGCCAACAACTGGCCCTCTAAGATCCTTGGGCAGATAGATATGGTGCGGCAGCAACACGTTGAGGATGAGGAGAAGTTCCGCAAAATCCAGCTCATGGACCAGAACAACTTCCAGGAGAAGCTGGAAGGGCTGCAG
Seq C2 exon
CTGGTGGTGGCTGGCTTCTCCATCCATGTGGAGATTGCACGAGCACACGAGATTGCCAACGAGGTGCGGCGGGTCAAGAAGCAGCTGAAGGACTGCCAGCAGCTGGCGATGCTGTACAACAACCGCGAGCGCATCTTTGGCTTGCCTATCACCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGATTGTGAAGGTCATGT
R:
TGGTGATAGGCAAGCCAAAGA
Band lengths:
236-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types