DreEX6092628 @ danRer10
Exon Skipping
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34445742-34446283:-
Coord C1 exon
chr11:34446201-34446283
Coord A exon
chr11:34445973-34446114
Coord C2 exon
chr11:34445742-34445897
Length
142 bp
Sequences
Splice sites
3' ss Seq
CAATGCTAAATTTTGTGTAGGTG
3' ss Score
5.09
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GAGATTTTATCTAAAGCCATGTCTGATTATGATCTAATAGATGAATTCTATTACAGTCTTTCCGATGAGGAATTCAAAGAGAA
Seq A exon
GTGGTCAGCAATGGCCTGGCCCCATAAGATCCTGACCCAGATGGAAACAGTGAGTGCTCAGCATGTTGACGATGAAGAACGTTTCGATAAGATCCAGGTTGCAGATCAAAACAGCTTCCTGGAACGCTTGAGTTTCCTCGAG
Seq C2 exon
ATGGTGGTGGCTGGATTTTCTGGTTATACAAACCTTGAGCGAGCACACGAAGTGGCAAATGAAGTGCGGAGAGTAGGCAAACAGCTGAAAGAGTGCCAGGAAATGGCGCAGCTTTACAATAACCGTGAACGACTCTTTGGAAAACCAGTTACTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATTTTATCTAAAGCCATGTCTGA
R:
TTTCCAAAGAGTCGTTCACGGT
Band lengths:
226-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]