RnoEX6054763 @ rn6
Exon Skipping
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7384511-7386618:-
Coord C1 exon
chr16:7386536-7386618
Coord A exon
chr16:7385194-7385335
Coord C2 exon
chr16:7384511-7384666
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTGATCCTCTTTCCTGCCAGGTG
3' ss Score
11.93
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GAGCGGATCGTAAAGGTCATGTCTGACTACGAGGTCATGGATGAATTCTTTTACAACCTTACCACTGACGACTTCAATGACAA
Seq A exon
GTGGGCTGCCAACAACTGGCCCACGAAGATCCTCGGGCAGATAGATATGGTGCGGCAACAGCATGTTGAGGATGAGGAGAAATTCCGCAAAATCCAGCTCATGGACCAGAACAACTTCCAGGAGAAGCTGGAAGGGCTTCAG
Seq C2 exon
CTGGTGGTGGCTGGCTTCTCCACCCATGTGGAGATTGCACGAGCACACGAGATTGCCAACGAGGTGCGGCGGGTCAAGAAGCAGCTAAAGGACTGCCAGCAGCTGGCGATGCTGTACAACAACCGCGAGCGCATCTTTGGCTTGCCTATCACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-'27-23,'27-22,28-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGATCGTAAAGGTCATGT
R:
TGGTGATAGGCAAGCCAAAGA
Band lengths:
236-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]