MmuEX6040518 @ mm9
Exon Skipping
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32114938-32116543:-
Coord C1 exon
chr14:32116461-32116543
Coord A exon
chr14:32115481-32115622
Coord C2 exon
chr14:32114938-32115093
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTGATCCTCTTTCCCGCCAGATG
3' ss Score
11.6
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GAGCGGATTGTGAAGGTCATGTCTGACTATGAGGTCATGGATGAATTCTTCTACAACCTCACCACAGACGACTTCAATGACAA
Seq A exon
ATGGGCTGCCAACAACTGGCCCTCTAAGATCCTTGGGCAGATAGATATGGTGCGGCAGCAACACGTTGAGGATGAGGAGAAGTTCCGCAAAATCCAGCTCATGGACCAGAACAACTTCCAGGAGAAGCTGGAAGGGCTGCAG
Seq C2 exon
CTGGTGGTGGCTGGCTTCTCCATCCATGTGGAGATTGCACGAGCACACGAGATTGCCAACGAGGTGCGGCGGGTCAAGAAGCAGCTGAAGGACTGCCAGCAGCTGGCGATGCTGTACAACAACCGCGAGCGCATCTTTGGCTTGCCTATCACCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0240317=Seryl_tRNA_N=PD(12.9=42.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGATTGTGAAGGTCATGT
R:
TGGTGATAGGCAAGCCAAAGA
Band lengths:
236-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: