GgaEX6009960 @ galGal4
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3052440-3054339:+
Coord C1 exon
chr12:3052440-3052522
Coord A exon
chr12:3053584-3053725
Coord C2 exon
chr12:3054184-3054339
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATGACATCATGTGAGTGCAGGTG
3' ss Score
0.15
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GAACTGATTTGTGAAGTCATGGAAGATTACAAAGTCTTGGAGGAATTCCTTTACAATCTCACGGAGGAAGATTTCAGTGACAA
Seq A exon
GTGGGCTGCAAGTTACTGGCCCCTGAAAATAGCTATGCAGACTGAGGCTATTCAGCTCCAGCATGTGCAGGATGAAGAAAGGTTCCGTGAAATCCAACTAACGGATCACAACATATTTGAAGAGAAGCTGGAGGACATGAAG
Seq C2 exon
CTGACTGTAGGTGAATTTTCTGTCCAGGTGGACATCAGACAAGCTCATACTTTGGCTAATGAAGCAAGGCTGGTTGGGAAACAGCTGAAGGAGCTTCAGAATTTGGCCATTCTGTACAACAACCGGGAAAAAATCTTTGGGATGAAAATTACTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGATTTGTGAAGTCATGGA
R:
TCCCGGTTGTTGTACAGAATGG
Band lengths:
211-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]