BtaEX6094916 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49069398-49071198:-
Coord C1 exon
chr22:49071012-49071198
Coord A exon
chr22:49070080-49070171
Coord C2 exon
chr22:49069398-49069552
Length
92 bp
Sequences
Splice sites
3' ss Seq
CCCCTGCCATGTCCCTCCAGGAT
3' ss Score
11.71
5' ss Seq
AACGTAAGC
5' ss Score
7.35
Exon sequences
Seq C1 exon
GAGTTGATTTGCCTCCGGGCCATCCGAGACGTGAATGTGCCCAAGTTCCTGCAGGAGGACCTCAAGCTCTTCTCTGGGATCGTGTCTGACCTGTTCCCCACCATCAAGGAGGAGGAGACTGACTACGGCATCCTGGACAAGGCCATCCGCAAGGCCTGCGAGAAGAGCAACCTGAAGGACGTTGACG
Seq A exon
GATTCCTGACCAAGTGTATCCAGCTCTACGAGACCACGGTGGTGCGGCACGGCCTCATGCTCGTCGGGCCCACAGGCTCCGGCAAGAGTAAC
Seq C2 exon
TGTTACAGAGTCCTGGCCGCCGCCATGACGTCACTGAAAGGGCAGCCGTCCATCAGCGGCGGTGTGTACGAGGCCGTCAGCTACTACGTGCTCAACCCCAAGTCCATCACCATGGGACAGTTGTATGGGGAGTTTGACCTGCTCACCCATGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794-'34-37,'34-36,36-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(8.8=41.9)
C2:
PF077289=AAA_5=FE(34.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACTGACTACGGCATCCT
R:
GACTTGGGGTTGAGCACGTAG
Band lengths:
178-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]