GgaEX6009944 @ galGal4
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3068565-3069611:+
Coord C1 exon
chr12:3068565-3068751
Coord A exon
chr12:3068861-3068952
Coord C2 exon
chr12:3069457-3069611
Length
92 bp
Sequences
Splice sites
3' ss Seq
CACTTCATCTTCCCCTACAGGTT
3' ss Score
11.24
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GATCTGATCTGCCTGCGGGCTATCAGGGATGCCAACATACCCAAATTCCTGCAGGATGACCTCAAGCTCTTCAGTGGCATAGTCTCCGACTTATTTCCCAAGATCAAAGAGCAGCCCATTGATTATGGCATCCTGGAAGAAGCCATTCGCAAAGCCTGCATCAAAAAGAGTCTAAAGGATGTTGATG
Seq A exon
GTTTTGTGACTAAGTGCATCCAGCTGTATGAAACCACTGTGGTTCGGCACGGCCTCATGTTAGTGGGGCCAACAGGCTCTGGGAAGACGAAG
Seq C2 exon
TGTTATGAAGTCCTGGCAGCTGCAATGACGTCACTGCAAGGTCAGCCTGCAGCCAGTGGTGGGAATTACGAACCAGTCAGCTACTTTGTACTGAATCCCAAATCCATCACAATGGGCCAGCTTTATGGAGAGTTTAACTTATTAACGCATGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'34-35,'34-34,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(8.8=41.9)
C2:
PF077289=AAA_5=FE(34.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCAAGCTCTTCAGTGGC
R:
CTGACCTTGCAGTGACGTCAT
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]