DreEX0027423 @ danRer10
Exon Skipping
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34420606-34422561:-
Coord C1 exon
chr11:34422375-34422561
Coord A exon
chr11:34421385-34421476
Coord C2 exon
chr11:34420606-34420760
Length
92 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTCCTTGTCTTGCAGGCT
3' ss Score
11.16
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAGCTGATATGTCTGCGTGCCATCAGGGATGTCAATGTACCAAAGTTTCTTCAGGATGACCTCAAACTCTTCAATGGCATTGTATCTGACCTCTTCCCCAAGATCCGTGAAGAGCCGATTGACTATGGCACCCTTGATGAGTCCATAAGGAATGTCTGTGCAAACAAGTGCCTTAAAGATGTGGATG
Seq A exon
GCTATATAACCAAATGCATTCAGTTGTACGAGACCACTGTAGTCAGACACGGTCTAATGTTGGTGGGACCATCAGGCTCTGGGAAAACTAGG
Seq C2 exon
TGTTATGAAGTGCTGGCAGCAGCCATGACGGCTCTGAAAGGCCAGCCCTCAGTTAGCGGAGGAGAATATGAGGCTGTACAGACCTATGTGCTTAATCCAAAGTCCATCACCATGGGGCAGCTTTACGGAGAATTCGACCAGCTTACTCACGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115-'37-37,'37-36,38-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(8.8=40.6)
C2:
PF077289=AAA_5=FE(34.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTCTTCCCCAAGATCCG
R:
TTCTCCTCCGCTAACTGAGGG
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]