MmuEX6040536 @ mm10
Exon Skipping
Gene
ENSMUSG00000019027 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:31290421-31292500:-
Coord C1 exon
chr14:31292314-31292500
Coord A exon
chr14:31290763-31290854
Coord C2 exon
chr14:31290421-31290575
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCTCCTGCCTTGGCCCCTAGGCT
3' ss Score
10.27
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
GAGCTGATCTGCCTTCGGGCCATTCGAGATGTGAATGTGCCGAAGTTCCTGCAGGAAGACCTCAAGCTCTTCTCAGGGATTGTGTCTGACCTGTTCCCTACCATCAAGGAAGAGGAGACTGACTACGGCATCCTGGACCAGGCCATCCGCAGGTCCTGTGAGAAGAACAACCTCAAGGATGTGGAGG
Seq A exon
GCTTCCTGATCAAGTGCATCCAGCTGTATGAGACCACAGTGGTACGGCACGGCCTCATGCTTGTTGGGCCCACAGGCTCTGGCAAGAGTAAT
Seq C2 exon
TGTTACAGAGTCCTGGCAGCCGCCATGACATTGCTGAAAGGGAAGCCATCCATCAGTGGTGGCGTGTATGAAGCTGTCAACTACTACGTGCTCAACCCCAAGTCCATCACGATGGGCCAGCTGTATGGGGAGTTTGACCTGCTCACCCATGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-'42-44,'42-43,43-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(8.8=41.9)
C2:
PF077289=AAA_5=FE(34.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACTGACTACGGCATCCT
R:
GACTTGGGGTTGAGCACGTAG
Band lengths:
178-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types