RnoEX6054777 @ rn6
Exon Skipping
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7374543-7376143:-
Coord C1 exon
chr16:7375957-7376143
Coord A exon
chr16:7374881-7374972
Coord C2 exon
chr16:7374543-7374697
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCCCCCGCCTCGTCCCCTAGGCT
3' ss Score
10.64
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
GAGCTGATCTGCCTTCGGGCCATCCGGGATGTGAATGTACCCAAGTTCCTGCAGGAAGACCTCAAGCTCTTCTCGGGGATTGTGTCTGACCTGTTCCCTACCACCAAGGAAGAGGAGACCGACTATGGCATCCTGGACCAGGCCATCCGCAAGGCCTGTGAGAAAAACAACCTCAAGGATGTGGAGG
Seq A exon
GCTTCCTGATCAAGTGCATCCAGCTGTACGAGACCACAGTGGTACGGCACGGCCTCATGCTTGTTGGACCCACCGGCTCTGGCAAAAGTAAT
Seq C2 exon
TGTTACAGAATCCTGGCAGCTGCCATGACATCGCTGAAAGGGAAGCCATCCATTAGTGGTGGCGTGTACGAAGCTGTCAACTACTACGTGCTCAACCCCAAGTCCATCACAATGGGTCAGCTGTATGGGGAGTTTGACCTGCTCACCCATGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-'46-43,'46-42,47-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(8.8=41.9)
C2:
PF077289=AAA_5=FE(34.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCGACTATGGCATCCT
R:
GACTTGGGGTTGAGCACGTAG
Band lengths:
178-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]