BtaEX6095293 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50998123-51000135:+
Coord C1 exon
chr22:50998123-50998215
Coord A exon
chr22:50998308-50998499
Coord C2 exon
chr22:51000043-51000135
Length
192 bp
Sequences
Splice sites
3' ss Seq
AGATCTCTTGTCCTTGGCAGACC
3' ss Score
7.09
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACAATGACAGCAACTTCCACGTGGATTTTGTGGTGGCAGCGGCCAGCCTGAGAGCTCAGAACTATGGGATCCCAGTGGCCAGCCACGCTGAG
Seq A exon
ACCAAGCGAATTGTGGGCCGGATTATCCCAGCCGTTGTCACCACTACAGCGGCCGTGGCTGGCCTGGTGGGCCTGGAGCTGTACAAGGTGGTGGGTGGACCACGGCCCCGCCATGCCTTTCGCCACAGCTATCTGCACCTGGCTGAAAACTACTTTAGCCGCTGGGTACCTAAGGCCCCAGACATCCAGAAG
Seq C2 exon
TTCCATCACCTGAAGTGGACCTGCTGGGACCGCCTGGAAGTGCCTGCTGGGCAGCCTGAGAGGACCCTGGAGTCGTTGCTGGCCCACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335-'26-30,'26-29,27-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(43.5=100)
A:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(19.7=37.5)
C2:
PF093585=UBA_e1_C=FE(24.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATGACAGCAACTTCCACG
R:
CTGGATGTGGGCCAGCAAC
Band lengths:
186-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]