MmuEX6068760 @ mm10
Exon Skipping
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107981204-107983189:+
Coord C1 exon
chr9:107981204-107981296
Coord A exon
chr9:107981390-107981581
Coord C2 exon
chr9:107983097-107983189
Length
192 bp
Sequences
Splice sites
3' ss Seq
AAATGCCCTGTCCTTGACAGATC
3' ss Score
8.67
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GATGATGACAGCAACTTCCATGTGGACTTTGTGGTAGCAGCGACAGACCTGCGATGTCAGAACTACGGGATCCTACCAGTTAATCATGCTCGG
Seq A exon
ATCAAGCAAATCGTGGGCCGGATTATCCCAGCCATTGCCACCAGTACAGCAGTTGTGGCAGGCTTACTGGGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCCGATCCCATGGTACCTTTCGTCACAGCTATCTGCACCTGGCTGAAAACCACTTCATCCGCTCAGCGCCTTCTGCCCCAGCCGTCCAGTCG
Seq C2 exon
TTCCGTGACCTGAAATGGACCTGTTGGGACCGCCTGAAGGTGCCCGCTGTGCAGCCTGAAAGGACACTGAAGTCACTGCTGGCCCATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-'32-56,'32-49,34-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(43.5=100)
A:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.8=37.5)
C2:
PF093585=UBA_e1_C=FE(23.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGACAGCAACTTCCATGTG
R:
CTGGAGATGGGCCAGCAGT
Band lengths:
186-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types