RnoEX6037545 @ rn6
Exon Skipping
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116760029-116762123:+
Coord C1 exon
chr8:116760029-116760121
Coord A exon
chr8:116760215-116760406
Coord C2 exon
chr8:116762031-116762123
Length
192 bp
Sequences
Splice sites
3' ss Seq
AAGTGCCCTGTCCTTGACAGATC
3' ss Score
8.31
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GATGACAGCAGCAACTTCCACGAGGACTTTGTAGTAGCAGCGACAGACCTGCGCTGTCAGAACTATGGGATCCTGCCAGTTAACCGTGCTCGG
Seq A exon
ATCAAGCAAACCATCGGCCGGATTATCCCAGCCATTGCCACCAGTACAGCAGTTGTGGCGGGCTTACTGGGCCTGGAGCTGTATAAGGTGGTAAGTGGGCCACGGCCCCTTGGCACCTTTCGGCACAGCTACCTGCACCTGGCTGAAAACCACTTCATACGCTCAGCACCTTCTGCCCCGGCCATGCAGTCG
Seq C2 exon
TTCCATCACCTGGAATGGACCTGTTGGCACCGCCTGACGGTGCCTGCTGGGCAGCCTGAGAGGACACTGGAATCCCTGCTGGCCCATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195-'23-32,'23-31,25-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(43.5=100)
A:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.8=37.5)
C2:
PF093585=UBA_e1_C=FE(23.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACAGCAGCAACTTCCAC
R:
CTGGAGATGGGCCAGCAGG
Band lengths:
186-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]