HsaEX6056102 @ hg38
Exon Skipping
Gene
ENSG00000182179 | UBA7
Description
ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr3:49806073-49808112:-
Coord C1 exon
chr3:49808020-49808112
Coord A exon
chr3:49807736-49807927
Coord C2 exon
chr3:49806073-49806165
Length
192 bp
Sequences
Splice sites
3' ss Seq
AAATCTCTTGTCCTTGGCAGAGC
3' ss Score
6.68
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
GATGATGACAGCAACTTCCATGTGGACTTTGTGGTAGCGGCAGCTAGCCTGAGATGTCAGAACTACGGGATTCCACCGGTCAACCGTGCCCAG
Seq A exon
AGCAAGCGAATTGTGGGCCAGATTATCCCAGCCATTGCCACCACTACAGCAGCTGTGGCAGGCCTGTTGGGCCTGGAGCTGTATAAGGTGGTGAGTGGGCCACGGCCTCGTAGTGCCTTTCGCCACAGCTACCTACATCTGGCTGAAAACTACCTCATCCGCTATATGCCTTTTGCCCCAGCCATCCAGACG
Seq C2 exon
TTCCATCACCTGAAGTGGACCTCTTGGGACCGTCTGAAGGTACCAGCTGGGCAGCCTGAGAGGACCCTGGAGTCGCTGCTGGCTCATCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179-'35-53,'35-51,37-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(43.5=100)
A:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.8=37.5)
C2:
PF093585=UBA_e1_C=FE(23.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGACAGCAACTTCCATGTG
R:
CTGAAGATGAGCCAGCAGC
Band lengths:
186-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains