BtaEX6095306 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50993788-50994946:+
Coord C1 exon
chr22:50993788-50993885
Coord A exon
chr22:50993970-50994113
Coord C2 exon
chr22:50994764-50994946
Length
144 bp
Sequences
Splice sites
3' ss Seq
AAACTGAATACCCTCTGCAGGAA
3' ss Score
5
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
AGGACGGGACCTTGGAGATTGGCGACACAACAGCTTTCTCTTGTTACTTACGTGGCGGGGCTGTCACTGAGGTCAAGAGAGCCAAGACTGTCAGCCAC
Seq A exon
GAACCCCTGGACACAGCCCTCCTTCAACCCCGTGTGGTGGCCCAGAGTGCCCAGAAAGTTCGTGCCCGCTGCCTGCATCAGTCCTTCCGCGCACTGCACAAGTTCCAGCAGCTCCATGGCCGCCCTCCCAAGCCTTGGGATCCT
Seq C2 exon
GTTGATGCAGAGATGGTGGTGGACCTGGCCCAGGCCATGGGACCACTGAAGGGGACAGAAGGAGAGCCTCTGGAAGAGCAGCTGGATGAGGCTCTGGTGCGGACAGTTGCCCTGAGCAGTGCTGGTGGCTTGAGCCCCATGGCAGCCGTGCTGGGTGCAGTGGCTGCCCAAGAAGTGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.167 C2=0.295
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCGACACAACAGCTTTCT
R:
CACTTCTTGGGCAGCCACTG
Band lengths:
257-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]