MmuEX6068771 @ mm9
Exon Skipping
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107879462-107880353:+
Coord C1 exon
chr9:107879462-107879559
Coord A exon
chr9:107879660-107879806
Coord C2 exon
chr9:107880183-107880353
Length
147 bp
Sequences
Splice sites
3' ss Seq
GCAACCCCGACCCCCTACAGAAG
3' ss Score
3.64
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
AAGACGGGTCCTTGGAGATTGGAGATACGACAACTTTCTCCCGTTACTTGAGAGGTGGGGTTGTCACCGAAGTCAAGAGACCCAAGACCGTGAGGCAT
Seq A exon
AAGCCCCTGGACATAGCTCTGCTTCAGCCCCATGTGGTGGCTCAGAATACTCAGGAAGTACAGCGTGCTCACTGCCTACATCAGGCCTTCCATGTACTGCACAAGTTCCAGCAACTTCATGGCCGGCTACCCAAGCCATGGGATCCT
Seq C2 exon
GATGATGCAGAGACTGTGGTGGAGCTGGCCCAGGACCTGGAGCCACTAAAAGGGACAGAAGAAGAGTCACTGGATGAGGCTCTCCTCCGCACAATTGCCCTGAGTAGTGCTGGTACCTTAAGCCCCATGGCAGCCATTATGGGAGGAGTGGCTGCTCAGGAGGTCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.041 C2=0.193
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTCCTTGGAGATTGGAGA
R:
AGCAGCCACTCCTCCCATAAT
Band lengths:
250-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: