RnoEX6037554 @ rn6
Exon Skipping
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116755792-116756653:+
Coord C1 exon
chr8:116755792-116755889
Coord A exon
chr8:116755979-116756125
Coord C2 exon
chr8:116756483-116756653
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGACCCTGGTCCCCTACAGAAG
3' ss Score
7.52
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
AAGATGGATCCTTGGAGATTGGAGATACAACAACTTTCTCCCGTTACTTGAGGGGTGGGGTTGTCACTGAAGTCAAGAGACCCAAGACTGTGAAGCAT
Seq A exon
AAGCCCCTGGACATAGCTCTGCTCCAGCCCTGCATGGTGGTCCAGAATACTCAGGAAATACAACGCGCTCACTGCCTACACCAGACCTTCCATGCACTGCACAAGTTCCAGCAACTTCATGGCCGGCTACCCAAGCCCTGGGATCCT
Seq C2 exon
GATGACGCAGAGACCGTGGTGTGGCTGGCCCAGGACCTAGAGCCACTAAAAGGGGCAAAAGAAGAGTCGCTGGATGAGGCTCTACTCCGGACAATTGCCCTGAGTAGTGCTGGTAGCTTAAGTCCCATGGCAGCCATTCTGGGAGGAGTGGCTGCCCAGGAAGTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195-'8-13,'8-11,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCCTTGGAGATTGGAGA
R:
CCACTCCTCCCAGAATGGCT
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]