GgaEX6009817 @ galGal3
Exon Skipping
Gene
ENSGALG00000002521 | F1P543_CHICK
Description
NA
Coordinates
chr12:2269372-2269937:-
Coord C1 exon
chr12:2269840-2269937
Coord A exon
chr12:2269604-2269750
Coord C2 exon
chr12:2269372-2269530
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCCCCGTGCTGTGTCAGCAGGAG
3' ss Score
6.57
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
ATGCCTTCAGGTTGGAGATCGGTGACACAAGCGCCTTCTCGCCATACCGTGGGGGGGGGCGGATCTCGGAGGTGCGGCCCCGCCAGGAGCGCTCGTAT
Seq A exon
GAGCCCCTCCGCCGGGCGCTGGCGATGCCCAGGATCCAGACCAGGAGCTCCACGGAGCTGCTGCGCAGCCGCACTCTGCACGCCGCCTTCTGGGCTCTGCACGCCTTCCGCCAGCAGCGGGGCCGCCTGCCCCAGCCCCGGGCACCT
Seq C2 exon
GAGGACGCTGAGCGTGTGCTGGAGCTGGCACGTGAGCTGGGCTCAGCGCTGGGCCCCCTGGATGAGGACGTCGTGCGGGCGTTCGCCAGCGTCAGCGCCGGGGAGCTGTGCCCGGTGGCGTCCTTCATGGGCGCGCTGGCTGCCCAGGAGGCGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.224 C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF052378=MoeZ_MoeB=PU(52.5=58.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGGTTGGAGATCGGTG
R:
GCCCATGAAGGACGCCAC
Band lengths:
227-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]