BtaEX6095339 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51071913-51072753:-
Coord C1 exon
chr22:51072649-51072753
Coord A exon
chr22:51072115-51072240
Coord C2 exon
chr22:51071913-51072005
Length
126 bp
Sequences
Splice sites
3' ss Seq
AGCACCCGGCCCTGGTGCAGTGT
3' ss Score
2.75
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GAAGGGCGGCTGGTGGAGAAGGAGAGCTCTGAGTGGCAGTTGCAGGGACAGCCCACCGTCCTCCTCACCCTGGCCCACATCTTCCATCACTTTGCACCGCTCCTG
Seq A exon
TGTGAGGTGTACGTGGTGGAGGCCGTGCTTATGAGCTTCCTGCTGGGCGTCGTGGAGGCGGGCCCCCCCGAGCAGGCGCAGACCGTGGTACACCACGTCCTGGACCTCCTGTGGCTCTTCATGGAG
Seq C2 exon
GACTACGAGGTGCAGGACTGCCTCAAGCAGCTGATGATGTCCCTGTTGCGGCTGTACCGCTTCTCGCCCATCGTCCCCGACCTGAGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588-'12-20,'12-18,13-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGCGGCTGGTGGAG
R:
CAGGCTCAGGTCGGGGAC
Band lengths:
195-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]