GgaEX6009811 @ galGal4
Exon Skipping
Gene
ENSGALG00000002486 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr12:2351212-2352269:+
Coord C1 exon
chr12:2351212-2351316
Coord A exon
chr12:2351451-2351576
Coord C2 exon
chr12:2352177-2352269
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACTTGCCTGTCTTCCTGCAGTGC
3' ss Score
11.12
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAGGGGAAGCTGGTGGAGAAGGATGCGTCCATGTGGCAGCTGCAGGGAGAACCCACAGTGCTGATTACATTAGCCCACATCTTCAATTATTTCTCCCCTCTTATG
Seq A exon
TGCAAGGTGTACCTGGTGGAAGATGTGCTCATGACCTTCCTGTTGAGCATCCTGGAGCGAGGAGGGGCAGTGGATGCCCATCCGCTTATTCAGCAGCTGCTGGATCTCATGTGGCTTCTCATGGAG
Seq C2 exon
GAATATGAAGTGCACGAGTGCCTCAAGCAGCTACTGATGTCACTGCTGCGGGCCTACAGGTTCTCTCCTATCATCCCAGACCTAGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002486-'13-20,'13-19,14-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGGTGGAGAAGGATGC
R:
TCCTAGGTCTGGGATGATAGGAGA
Band lengths:
187-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]