RnoEX6037571 @ rn6
Exon Skipping
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116846150-116846985:-
Coord C1 exon
chr8:116846881-116846985
Coord A exon
chr8:116846360-116846485
Coord C2 exon
chr8:116846150-116846242
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTGCCTCCCCTTTGCTGCAGCGC
3' ss Score
9.37
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GAAGGGCGGTTGGTGGAGAAGGAGAGCTCTGAGTGGCAGCTGCACGGGCAGCCCACTGTCCTCCTCACGCTGGCCCACATCTTCCATCACTTTGCACCACTGCTG
Seq A exon
CGCAAGGTGTACCTAGTGGAGGCTGTGCTCATGAGCTTCCTGCTGGGCATTGTGGAGAAGGGCACCCCTGAGCAGGCCCAGTCCGTGGTACACCAGATCTTGGACCTCTTGTGGCTCTTCATGGAG
Seq C2 exon
GACTATGAAGTTCAGGATTGCCTCAAGCAGTTGATGATGTCTCTGCTACGTCTCTACCGATTCTCGCCCATTGTTCCGGACCTGGGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378-'28-26,'28-23,29-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGCGGTTGGTGGAGAA
R:
GTAGACCCAGGTCCGGAACAA
Band lengths:
196-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]