Special

BtaEX6095487 @ bosTau6

Exon Skipping

Gene
Description
glutamine--tRNA ligase [Source:RefSeq peptide;Acc:NP_001029640]
Coordinates
chr22:51489124-51489699:+
Coord C1 exon
chr22:51489124-51489254
Coord A exon
chr22:51489358-51489450
Coord C2 exon
chr22:51489562-51489699
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCACTGCCTGTGCCCTGCAGGTG
3' ss Score
9.95
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCAATGCGCAAGGGCAAGTTTGCTGAGGGTGAGGCCACATTGCGGATGAAGCTGGTGATGGAGGATGGCAAGATGGACCCCGTGGCCTACCGCGTCAAGTACACGCCGCACCACCGCACAGGGGACACCTG
Seq A exon
GTGCATCTACCCCACCTATGACTACACGCACTGCCTCTGTGACTCCATCGAGCACATCACCCACTCACTCTGCACCAAGGAATTCCAGGCCCG
Seq C2 exon
ACGCTCCTCCTACTTCTGGCTGTGCAATGCGCTGGACGTCTACTGTCCCGTGCAGTGGGAGTACGGCCGCCTCAATCTGCACTATGCTGTCGTCTCCNAGAAGAAGATTCTCCAGCTTGTGGCGGCTGGCGCTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018928-'20-16,'20-15,21-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0074916=tRNA-synt_1c=FE(14.3=100)
A:
PF0074916=tRNA-synt_1c=FE(10.3=100)
C2:
PF0074916=tRNA-synt_1c=FE(15.3=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATGAAGCTGGTGATGGAG
R:
CATAGTGCAGATTGAGGCGGC
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]