RnoEX6037652 @ rn6
Exon Skipping
Gene
ENSRNOG00000060912 | Qars
Description
glutaminyl-tRNA synthetase [Source:RGD Symbol;Acc:1359448]
Coordinates
chr8:117302990-117303497:+
Coord C1 exon
chr8:117302990-117303071
Coord A exon
chr8:117303073-117303083
Coord C2 exon
chr8:117303360-117303497
Length
11 bp
Sequences
Splice sites
3' ss Seq
CTCACTGTGTACCAAGGAATTTC
3' ss Score
-12.9
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTGCATCTACCCCACCTACGACTACACACACTGTCTCTGTGATTCCATCGAGCACATCACCCACTCACTGTGTACCAAGGAA
Seq A exon
TTCCAGGCTCG
Seq C2 exon
ACGGTCTTCCTACTTTTGGTTGTGTAATGCACTGGATGTCTACTGCCCTGTCCAGTGGGAATATGGCCGCCTCAATCTGCACTATGCTGTTGTCTCAAAGCGGAAGATTCTCCAGCTTGTGGCAGCTGGTGCTGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060912-'20-27,'20-24,21-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0074916=tRNA-synt_1c=FE(9.0=100)
A:
PF0074916=tRNA-synt_1c=FE(1.0=100)
C2:
PF0074916=tRNA-synt_1c=FE(15.3=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACATCACCCACTCACTG
R:
ATATTCCCACTGGACAGGGCA
Band lengths:
97-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]