MmuEX0038140 @ mm9
Exon Skipping
Gene
ENSMUSG00000032604 | Qars
Description
glutaminyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:1915851]
Coordinates
chr9:108415397-108416137:+
Coord C1 exon
chr9:108415397-108415527
Coord A exon
chr9:108415617-108415709
Coord C2 exon
chr9:108416000-108416137
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTAATGCTTCTGTTCCACAGGTG
3' ss Score
9.78
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GCAATGCGCAAGGGCAAATTTGCAGAAGGAGAGGCCACACTTCGAATGAAGTTGGTGATGGAAGATGGCAAGATGGACCCCGTGGCCTATCGAGTCAAGTACACGCCACACCATCGCACAGGGGACAAATG
Seq A exon
GTGCATCTACCCCACCTATGACTACACACATTGTCTGTGTGACTCCATTGAGCACATTACCCACTCGTTGTGTACCAAGGAGTTCCAGGCTCG
Seq C2 exon
ACGGTCTTCCTACTTTTGGTTATGTAACGCTCTGAAAGTCTATTGTCCTGTTCAGTGGGAATATGGTCGCCTCAATTTGCACTATGCTGTTGTCTCAAAGCGCAAGATTCTCCAGCTTGTAGCAGCTGGTGCTGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032604-'18-25,'18-23,19-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0074916=tRNA-synt_1c=FE(14.3=100)
A:
PF0074916=tRNA-synt_1c=FE(10.3=100)
C2:
PF0074916=tRNA-synt_1c=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGGCCACACTTCGAATG
R:
AGGCGACCATATTCCCACTGA
Band lengths:
176-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: