GgaEX1047532 @ galGal4
Exon Skipping
Gene
ENSGALG00000006853 | QARS
Description
glutaminyl-tRNA synthetase [Source:RefSeq peptide;Acc:NP_001012800]
Coordinates
chr12:11584227-11584779:+
Coord C1 exon
chr12:11584227-11584357
Coord A exon
chr12:11584476-11584568
Coord C2 exon
chr12:11584642-11584779
Length
93 bp
Sequences
Splice sites
3' ss Seq
AAAATTCACACGCCCTGTAGGTG
3' ss Score
5.77
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACATGCGAAAGGGGAAGTTTGGGGAGGGGGAGGCCACGCTGCGGATGAAGCTGGTGATGGAGGATGGGAAGATGGACCCCGTTGCCTACCGCGTCAAGTTCACACCACACCACCGCACCGGGGACAAGTG
Seq A exon
GTGCATCTACCCGACGTATGACTACACTCACTGCCTTTGCGACTCCATTGAGCACATCACGCACTCCCTCTGCACCAAGGAGTTCCAGGCCAG
Seq C2 exon
GCGCTCCTCCTACTTCTGGCTGTGCAACGCGCTGGACGTGTACTGCCCTGTGCAGTGGGAATACGGCCGCCTCAACCTGCTTTACACCGTTGTCTCCAAGAGAAAGATCATCCGCCTGGTGGAGACTGGGGCTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006853-'16-20,'16-19,18-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0074916=tRNA-synt_1c=FE(14.3=100)
A:
PF0074916=tRNA-synt_1c=FE(10.3=100)
C2:
PF0074916=tRNA-synt_1c=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCGCGTCAAGTTCACACC
R:
CCACCAGGCGGATGATCTTTC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]