DreEX6051562 @ danRer10
Exon Skipping
Gene
ENSDARG00000010316 | qars
Description
glutaminyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-1011]
Coordinates
chr8:46362249-46364671:-
Coord C1 exon
chr8:46364432-46364671
Coord A exon
chr8:46364259-46364351
Coord C2 exon
chr8:46362249-46362386
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTGTCCTGTGTACAGGTG
3' ss Score
9.59
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GGGTCATGCATATGTGTGCCACCAGCGCGGAGAGGAGCTCAAGGGTCACAACGTCCCTTCCTCTCCCTGGAGAGAGCGACCCGTGGAAGAGTCTTTGGTTTTGTTTGAGCACATGAGGAAGGGAATGTTTGCAGAAGGGGAAGCCACTCTCAGAATGAAGATGGTCATGGAAGATGGCAAAATGGACCCGGTGGCATATCGGATCAAATACACGCCGCATCACAGGACAGGAGACACTTG
Seq A exon
GTGCATATACCCCACATACGATTACACGCACTGTCTGTGCGACTCCATTGAGAACATCACACACTCTCTGTGCACCAAAGAGTTTCAGGCCAG
Seq C2 exon
ACGATCATCATATTTCTGGTTGTGCAATGCTCTGGATGTGTATTGCCCGGTGCAGTGGGAATATGGCCGACTGAACCTCACTTATACTGTCGTTTCCAAGAGAAAGATCATCAAATTGGTGGAAACAGGAGTTGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010316-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0074916=tRNA-synt_1c=FE(26.6=100)
A:
PF0074916=tRNA-synt_1c=PD(27.5=93.8)
C2:
PF0074916=tRNA-synt_1c=FE(15.3=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGGAAGCCACTCTCAGA
R:
TCAGTCGGCCATATTCCCACT
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]