BtaEX6095677 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51875217-51875527:+
Coord C1 exon
chr22:51875217-51875297
Coord A exon
chr22:51875373-51875408
Coord C2 exon
chr22:51875492-51875527
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCTCCCGCCCTCAGGGC
3' ss Score
12.36
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGAGAGCCTGGGGACCGAGGACAGGAGGGTCCACGAGGACCCAAGGGCGACCCTGGCCCCCCTGGAGCTTCTGGGGAGAGG
Seq A exon
GGCGTCAGTGGACTTCGGGGGCCTCCAGGCCCACAG
Seq C2 exon
GGGGACCCAGGTGTTCGAGGCCCAGCAGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'59-63,'59-62,60-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(29.5=100)
A:
PF0139113=Collagen=FE(12.5=100)
C2:
PF0139113=Collagen=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGAGGACAGGAGGGTC
R:
CTTTTCTCCTGCTGGGCCTC
Band lengths:
105-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]