BtaEX6096670 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3567977-3572193:+
Coord C1 exon
chr23:3567977-3568143
Coord A exon
chr23:3570603-3570759
Coord C2 exon
chr23:3572067-3572193
Length
157 bp
Sequences
Splice sites
3' ss Seq
CAATGGTGTTTGTGATCTAGAAA
3' ss Score
5.25
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GAATCAACATCTGAATTGCTAGAACGCAAGAAAGATCTGGAAGTTTTGCAGAACCTCTTGAAGGAGATCTCCAGCCATGGCTTGCCAGGGGATAAGGCTCTGGTATTTGAAAAAACAAATAATTTGTCAAAAAAATTCAAGGAAATGGAGGACACTGTCAAAGAAAA
Seq A exon
AAAAGAAGCAGTATCTTCTTGTCAAGAACAGATGGGTGCCTTTCAAGTCCTGGTTAAATCATTAAAATCATGGATAAAAGAAACCACAGAAAGAGTTCCCGTTGTGCAGCCTTCTTTTGGTGCAGAAGATTTGCAGAAATCTTTGGAAGAAACCAAG
Seq C2 exon
AAATTACAAGAGAAGTGGAGCTTAAAAACACCAGAGATTCAGAAAGTCAGCGACAGTGGGAACTCACTATGTAACTTGATCAGCGCTGTCACCACCCCTGCGAAGGCCATAGCAGCAGTTAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237-'63-57,'63-56,64-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.132 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGAACGCAAGAAAGATCTGGA
R:
GGTGACAGCGCTGATCAAGTT
Band lengths:
243-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]