DreEX0004498 @ danRer10
Exon Skipping
Gene
ENSDARG00000101858 | FQ311894.1
Description
NA
Coordinates
chr13:1456470-1460206:+
Coord C1 exon
chr13:1456470-1456636
Coord A exon
chr13:1458664-1458820
Coord C2 exon
chr13:1460080-1460206
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGTGTGATTGTGTGTTGCAGAAT
3' ss Score
9.87
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GACACGAGCGCGGAGTTATCTCAGCATGTGAAGGACGTGGAGACTCTGCACAAACTCTCAGAAGAGCTCAGTAAACTCGGTCCTGAAGGAAGTGCAGATCTTCTCCAGAACAAGATGAAGAACATCTCTGACAACTTCAACGCTCTCAAGGAGACACTGACAGAGAA
Seq A exon
AATGGCGGAGGTCTCGTCATGTCAGAATCAGCTGCAGGAGTTCAGAGCGGCTGCAGGAGTGTTAATGAAGTGGCTAGAGGAGACAAAAGAGCGAGTGCCAACACTTCAGCCCAACTGCAGTGAACAGGGCCTGAGAACTGACCTGAAAACGGTCAAC
Seq C2 exon
GACTTGCTGGACGCCTGGACCTCCAAATCTCCCGCGGTCCAGGATATAAATAGCAAGGGATCTGCTCTGTGTAGCCTAATCAGTGTTTTGACATCGCCAGCCAAAGCCAAGATACATCACAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101858-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=0.226 C2=0.093
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(53.4=100)
A:
PF0043516=Spectrin=PD(4.9=9.4),PF0043516=Spectrin=PU(54.4=81.1)
C2:
PF0043516=Spectrin=PD(43.0=79.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTGAAGGACGTGGAGAC
R:
GCTGGCGATGTCAAAACACTG
Band lengths:
245-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]