RnoEX0030030 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:37997036-38000369:-
Coord C1 exon
chr9:38000203-38000369
Coord A exon
chr9:37997985-37998136
Coord C2 exon
chr9:37997036-37997162
Length
152 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTTCATCAGAAAAGAAG
3' ss Score
-4.39
5' ss Seq
AAGGTGGCT
5' ss Score
2.88
Exon sequences
Seq C1 exon
GAATCCACTACTAAATTCTTAGAACACAGGAAAGATCTCGAAGCTTTGCACAGCCTCCTGAAAGAGATATCCAGCCACGGCTTACCAGGGGACAAAGCTCTGGTGTTTGAGAAAACTAATAATTTGTCAAAGAAATTCAAAGAACTGGAGGATACTATCCAAGAAAA
Seq A exon
AAGCTCTCAGTTCATGTCAGGAGCAGCTGAGTGCTTTCCACGACCTCGCTCAGTCCCTGAAAACATGGATAAAAGAAACAACCAAGCAGGTTCCCATCGTGAAGCCTTCTTTCGGCACAGAGGACTTGGAAAAATCTCTGGAGGAAACCAAG
Seq C2 exon
AAATTACAAGAAAAGTGGAGTCTGAAAACCCCAGAAATTCACAAAGCAAACAACAGTGGGGTCTCACTATGTAACCTGCTAAGTGCACTGATCAGCCCTGCAAAGGCCATAGCGGCGGCCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207-'78-75,'78-74,79-75
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.075 C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGGAAAGATCTCGAAGCT
R:
GGGCTGATCAGTGCACTTAGC
Band lengths:
242-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]