GgaEX1021105 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89848132-89850799:+
Coord C1 exon
chr3:89848132-89848298
Coord A exon
chr3:89849495-89849651
Coord C2 exon
chr3:89850673-89850799
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGTTGTCTTTAATTGTCTAGAGA
3' ss Score
5.79
5' ss Seq
TTGGTATGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
GAGGCTAGTGTGGAATTAGCGAAACATAAGAAAGACCTGGAAGTTTTGCAGAACCTTCTTGAAGAACTATCTTTACATGCACTTCCTGGGGATAAAGCACTGGTACTAGAAAAAGTAAATGCTTTGTCAAAAAAATTCAGAGAGGTAGAGGAGACTGTGAAGGAAAA
Seq A exon
AGAAGAGGATGTATCATCTTGTCAGAAAGAAATTGATAGTTTTGAGCTACTTGTAGAATCTTTAAAGAAATGGATAAAAGAGACAACAGAACGAATACCTGCTGCACAACCCTCTCTGAATACGGAAGAGTTAAAGAAGCCTCTGGAAGATACATTG
Seq C2 exon
AATTTAAAAGATGAATGGACATTAAAAGCAACTGAGCTGCAGAAAATGAACAGCAGAGGAACATTGTTATGTAGTCTGATTAGTGCTGTGACTTCTCCTGCAAAACTGAGAGCAGTTGCAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'58-58,'58-57,59-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.340 C2=0.070
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(53.4=100)
A:
PF0043516=Spectrin=PD(4.9=9.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGACCTGGAAGTTTTGCA
R:
TTGCAGGAGAAGTCACAGCAC
Band lengths:
242-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]