MmuEX0015751 @ mm9
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34269747-34272457:+
Coord C1 exon
chr1:34269747-34269913
Coord A exon
chr1:34271379-34271535
Coord C2 exon
chr1:34272331-34272457
Length
157 bp
Sequences
Splice sites
3' ss Seq
GGTTCCTTTTTGTTCATTAGGAA
3' ss Score
7.32
5' ss Seq
AAGGTGGCT
5' ss Score
2.88
Exon sequences
Seq C1 exon
GAATCAACTGCTAAATTCTTAGAACACAGGAAAGATCTCGAAGCTTTGCACAGCCTCCTGAAAGAGATATCCAGCCATGGCTTACCAGGGGACAAAGCTCTGGTGTTTGAGAAAACTAATAACTTGTCAAGGAAATTCAAAGAAATGGAGGATACTATCCAAGAAAA
Seq A exon
GAAAGACGCTCTAAGTTCTTGTCAGGAGCAGCTGAGTGCTTTTCAAACCCTCGCTCAGTCACTGAAAACATGGATAAAAGAGACAACCAAGCAGGTTCCCGTTGTGAAGCCTTCTCTTGGCACAGAGGACTTGAGAAAATCTCTGGAAGAAACCAAG
Seq C2 exon
AAATTACAAGAAAAGTGGAATCTGAAAGCACCAGAAATTCACAAAGCAAACAACAGTGGTGTCTCACTATGTAACCTGCTGAGTGCATTGATCAGCCCTGCAAAGGCCATAGCCGCAGCCAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'83-78,'83-77,84-78
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.170 C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACAGCCTCCTGAAAGAGA
R:
CTGATTTGGCTGCGGCTATGG
Band lengths:
248-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: