BtaEX6096688 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3506835-3509869:+
Coord C1 exon
chr23:3506835-3506992
Coord A exon
chr23:3507857-3508035
Coord C2 exon
chr23:3509731-3509869
Length
179 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTCTTTGTCGTGTAGAAA
3' ss Score
6.5
5' ss Seq
GAAGTATGG
5' ss Score
3.5
Exon sequences
Seq C1 exon
AGGAGCAAGAGGAATCGGCTTACAACCTCTACATCTCTGAAGTTCGAAACCTCAGGCTTCGGCTAGAGAGCTGTGAGGACCGTCTCATCAGACAGATCCGCACCCCGCTGGAGAGAGACGACCTGCATGAGAGCGTGTTCAGGATCTCGGAGCAGGAG
Seq A exon
AAACTAAAGAAAGAACTGGAGCGACTTAAAGATGATTTGGCCACGATCACAAGTAAATGTGAAGACTTTTTCAGTCAGGCGCCTGCCTCTGCCTCCACGCCCGCCTTGCGGTCTGAGCTCAGCGTGGTTGTCCAGAGCATGAACCATGTCTATTCCATGTCGTCCACCTACATAGAGAA
Seq C2 exon
GTTGAAAACGGTCAACTTGGTGTTAAAAAACACTCAAGCTGCAGAAGCCCTTGTCAAACTCTATGAAACTAAATTGTGTGAAGAGGAAGCAGTTATAGCTGACAAGAATAACATTGAGAATCTGATAAGTACTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237-'32-27,'32-26,34-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCAAGAGGAATCGGCTT
R:
AACTGCTTCCTCTTCACACAA
Band lengths:
252-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]