GgaEX6031928 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89806418-89807202:+
Coord C1 exon
chr3:89806418-89806578
Coord A exon
chr3:89806688-89806866
Coord C2 exon
chr3:89807064-89807202
Length
179 bp
Sequences
Splice sites
3' ss Seq
CGTCACCTTTCATTTTACAGAAA
3' ss Score
10.03
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CAGAGGAGCATGAAGAATCTATTTACAATCTGTACATCTCCGAAGTCAGAAATATCAGACTTCGGCTGGAGAGTTGTGAGGAACGGTTAATCCGACAGATCCGGACCCCAATGGAAAGAGATGATCTACACGAAAGCGTCTTTAGGATTTCAGAGCAAGAG
Seq A exon
AAACTGAAGAAGGAGCTGGATCGACTGAAGGATGACTTGGGAGTCATCACAGACAAATGTGAAGAGTTTTTCAGTCAGGCTGCTGGATCACCTTCAGTTCCTACTCTGCGCTCTGAACTCAGCGTTGTTATTCAGAATATGAACCAAGTTTATTCCATGTCTTCCATTTACATAGACAA
Seq C2 exon
ATTAAAAACTGTAAATTTGGTGCTGAAGAATACTCAAGGTGCAGAATCATTAGTAAAACTTTATGAAACTAAGTTATGTGAAGAAGAGGCAGTAACTGCTGACAAAACCAATATTGAAAATCTAATGGGTACATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'28-28,'28-27,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTACATCTCCGAAGTCAGA
R:
TTGGTTTTGTCAGCAGTTACTG
Band lengths:
244-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]