MmuEX0015742 @ mm9
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34226009-34227343:+
Coord C1 exon
chr1:34226009-34226166
Coord A exon
chr1:34226595-34226773
Coord C2 exon
chr1:34227205-34227343
Length
179 bp
Sequences
Splice sites
3' ss Seq
CCGTTTGTTTTCTGTACTAGAAA
3' ss Score
8.67
5' ss Seq
GAAGTATGG
5' ss Score
3.5
Exon sequences
Seq C1 exon
AGGAGCAAGAGGAATCTGTGTATAATCTTTACATCTCGGAAGTGCGAAACATTCGGCTCCGCCTGGAGAGCTGTGAAGACAGGTTGATTCGGCAGATCCGGACTCCCCTGGAAAGAGATGATTTACATGAAAGCATGCTCAGGATCACGGAGCAGGAG
Seq A exon
AAACTGAAGAAAGAGCTGGATCGGCTTAAAGATGACTTGGGAACGATCACAAATAAGTGTGAAGAGTTTTTCAGCCAAGCGGCTGACTCGCCGTCTGTCCCCGCTCTCCGATCAGAGCTCAGCGTGGTCATTCAGAGCTTGAGTCAGATCTACTCTATGTCTTCCACGTACATAGAGAA
Seq C2 exon
ATTGAAGACTGTGAATTTGGTTTTAAAAAACACTCAAGCTGCAGAAGCCCTTGTCAAACTCTACGAAACCAAACTGTGTGAAGAGGAAGCAGTTATAGCAGACAAGAATAACATTGAGAATTTAATGAGTACTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'48-42,'48-41,49-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCAAGAGGAATCTGTGT
R:
ACTGCTTCCTCTTCACACAGT
Band lengths:
251-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: