RnoEX6039191 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38040559-38041936:-
Coord C1 exon
chr9:38041779-38041936
Coord A exon
chr9:38041152-38041330
Coord C2 exon
chr9:38040559-38040697
Length
179 bp
Sequences
Splice sites
3' ss Seq
CCGTGTGTTTCCTGTACTAGAAA
3' ss Score
7.68
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
AGGAGCAAGAGGAGTCTGTGTACAATCTGTACGTCTCAGAAGTGCGCAACATCCGGCTTCGCCTGGAGAGCTGTGAAGACCGGTTGATTCGGCAGATCCGGACGCCTCTGGAAAGAGATGACCTACACGAAAGCATGTTGAGAATCACGGAGCAGGAG
Seq A exon
AAACTGAAGAAAGAGCTGGAACGGCTTAAAGACGACTTGGAGGCGATCACAAATAAGTGTGAAGAGTTTTTCAGCCAAGCGGCAGATTCCCCATCCGTCCCTGCCCTGCGATCAGAGCTCAGCGTGGTCCTCCAGAGCATGAGTCAGATCTACTCCATGTCTGCCACTTACGTAGAGAA
Seq C2 exon
GTTGAAGACTGTTAATTTGGTTTTAAAAAACACCCAAGCTGCAGAAGCCCTTGTCAAACTCTACGAAACCAAGCTGTGTGAAGAAGAAGCAGTCATAGCTGACAAGAATAACATTGAGAATTTAATGAGTACGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207-'41-36,'41-35,42-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCAAGAGGAGTCTGTGT
R:
TCTTCACACAGCTTGGTTTCGT
Band lengths:
242-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]