DreEX6059659 @ danRer10
Exon Skipping
Gene
ENSDARG00000098631 | CABZ01044277.1
Description
NA
Coordinates
chr13:1409047-1412079:+
Coord C1 exon
chr13:1409047-1409204
Coord A exon
chr13:1409353-1409531
Coord C2 exon
chr13:1411941-1412079
Length
179 bp
Sequences
Splice sites
3' ss Seq
TCTCGTTCTGATGCATGCAGAAG
3' ss Score
5.06
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
AAGAGCACGAGGAGTCCGTCTACAACCTCTTCATATCTGAGGTGCGCAACTTCCGCATGCGTGTGGAGGGACACGAGGAGCAGCTGATCCGCAAAATCCGAACCCCGCTGGACCGAGACGACCTGCAGGAGTGTCTGCTGCGCATCACTGAGCAGGAG
Seq A exon
AAGAAGAAGGTGGAGCTGGACAGGCTGAAGGATGAGCTGGAGACTCTGAGAGAGAAGTGTGAAGTTTTCCTCCGTCAGGCGTCCGCTTCTCCATCCGTCCCCACACTGTCCTCCGAGCTCAGCGTCCTCACCCAGAGCTCCAGCCAGGTCTACTCCATGTGCTGCATCTACCTGGAGAA
Seq C2 exon
GCTGAAGACGGTGAGTTTGGTGGTGAAACACAGTCAAAGCGCTGAAGCTCTGGTCAAACTATATGAGGCCAAGCTGAGCGAGGAGGATTCAGTAAATGCCAACATCAAGTCTATCGATGGAGTCGTGAGCACTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098631-'10-13,'10-11,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF101864=Atg14=PU(5.4=18.9)
A:
PF101864=Atg14=FE(32.1=100),PF142271=UBN2_2=PU(10.5=13.3)
C2:
PF101864=Atg14=FE(25.0=100),PF142271=UBN2_2=FE(60.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGAGTCCGTCTACAACCT
R:
TGAATCCTCCTCGCTCAGCTT
Band lengths:
242-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]