BtaEX6096701 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3493128-3496828:+
Coord C1 exon
chr23:3493128-3493223
Coord A exon
chr23:3493665-3493792
Coord C2 exon
chr23:3496735-3496828
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGCTGTTTTCTCTAGATT
3' ss Score
11.14
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GCACTTTACAATCAGTATTTACAGTTTAAAGAAACAGAAATTCCACCAAAGGAGACAGAAAAATCAAAAATTAAACGCTTATATAAATTATTAGAG
Seq A exon
ATTTGGATAGAGTTTGGACGCATCAAACTCCTTCAAGGTTATCACCCAAACGACATAGAAAAGGAATGGGGAAAGCTCATCATCGCCATGCTGGAGAGGGAGAAGGCTCTTCGTCCCGAAGTTGAAAG
Seq C2 exon
GTTGGAGATGTTGCAGCAGATTGCTAACCGAGTTCAGAGGGGCAGTGTCATCTGTGAAGACAAACTGTTGCTTGCCCGAAATGCTCTCCAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237-'16-11,'16-10,17-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTTAAAGAAACAGAAATTCCAC
R:
AGACTGGAGAGCATTTCGGGC
Band lengths:
170-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]