DreEX6059648 @ danRer10
Exon Skipping
Gene
ENSDARG00000102406 | si:ch211-165e15.1
Description
si:ch211-165e15.1 [Source:ZFIN;Acc:ZDB-GENE-081028-59]
Coordinates
chr13:1394007-1398657:+
Coord C1 exon
chr13:1394007-1394102
Coord A exon
chr13:1394490-1394617
Coord C2 exon
chr13:1398564-1398657
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTGTATGTGATGTAGATA
3' ss Score
5.94
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCACTTTATACTCAGTATCTACACTTTAAAGAGAACGAAATACCACCAAAAGAGAACGAAAAGTCCAAAATCAAGCATCTCTACAAAATGCTGGAG
Seq A exon
ATATGGATAGAGTTCGGGCGCGTGCAGCTGCCTCCGGGCTTTCATCCCAATGATGTGGAGAAAGAGTGGGGAAAGCTGATCGTGGCCATGCTGGAGCGAGAGAAGAGCCTGAGGCCGGAGGTGGACAG
Seq C2 exon
ACTGGAGATGCTCCAGCAAATTGCAAACCGTGTTCAGCGGGACTGCGCAGCCGGAGAGGATAAACTAGCGCTAGCACGCACCTCTCTGCAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102406-'20-18,'20-17,21-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(28.7=100)
A:
PF0043516=Spectrin=PD(35.2=88.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTAAAGAGAACGAAATACCACCA
R:
CAGAGAGGTGCGTGCTAGC
Band lengths:
162-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]