RnoEX0030010 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38051687-38055753:-
Coord C1 exon
chr9:38055658-38055753
Coord A exon
chr9:38055443-38055570
Coord C2 exon
chr9:38051687-38051780
Length
128 bp
Sequences
Splice sites
3' ss Seq
AGTTCTCTTGTTTCCTTAAGATT
3' ss Score
6.14
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GCACTTTATAATCAGTATTTACAGTTCAAAGAGAAAGAAATCCCACCAAAGGAGACAGAGAAATCAAAAATTAAACGGCTGTATAAATTATTAGAG
Seq A exon
ATTTGGATTGAGTTTGGGCGCATCAAACTCCTTCAAGGTTATCATCCCAACGACATCGAAAAGGAGTGGGGCAAACTCATCATCGCCATGCTCGAGCGGGAGAAGGCACTGCGTCCTGAGGTGGAGAG
Seq C2 exon
GTTGGATATGCTGCAGCAGATTGCTACCCGAGTTCAGAGGGATAGCGTCAGCTGTGAGGACAAACTCATGCTCGCCCGAAATGCTCTCCAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207-'23-16,'23-14,24-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTCAAAGAGAAAGAAATCCCAC
R:
AGACTGGAGAGCATTTCGGGC
Band lengths:
170-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]