MmuEX6023482 @ mm10
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34156599-34160713:+
Coord C1 exon
chr1:34156599-34156694
Coord A exon
chr1:34156781-34156908
Coord C2 exon
chr1:34160620-34160713
Length
128 bp
Sequences
Splice sites
3' ss Seq
AGTTCTCTTGTTCCCTTAAGATC
3' ss Score
5.99
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GCACTTTATAATCAGTATTTACAGTTCAAAGAGAAAGAAATCCCACCAAAGGAGATGGAGAAATCAAAAATTAAACGACTGTATAAATTATTAGAG
Seq A exon
ATCTGGATCGAGTTTGGGCGCATCAAACTCCTTCAAGGTTATCATCCGAACGACATCGAGAAGGAGTGGGGCAAACTCATCATCGCCATGCTTGAGCGGGAGAAGGCACTACGTCCCGAGGTTGAGAG
Seq C2 exon
GTTGGATATGCTGCAGCAGATTGCCACCCGAGTTCAGAGGGATAGTGTCAGCTGCGAAGACAAACTCATCCTCGCCCGAAATGCTCTCCAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'51-39,'51-37,52-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTCAAAGAGAAAGAAATCCCAC
R:
AGACTGGAGAGCATTTCGGGC
Band lengths:
170-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types