BtaEX6096706 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3436027-3486842:+
Coord C1 exon
chr23:3436027-3436119
Coord A exon
chr23:3459167-3459333
Coord C2 exon
chr23:3486730-3486842
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCATTCTCTGTTCCGTTTAGATA
3' ss Score
8.06
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTGAAATTAGTGAATATTAGAAATGATGACATAACAGATGGAAATCCCAAATTGACTTTGGGATTAATATGGACGATAATTTTGCACTTTCAG
Seq A exon
ATATCTGATATCCATGTTACTGGTGAGTCAGAAGACATGTCAGCGAAAGAGAGACTGTTACTGTGGACGCAGCAGGCCACGGAGGGTTATGCCGGGATTCGGTGTGAAAATTTCACCACCTGCTGGAGAGATGGGAAATTATTTAATGCCATCATTCATAAATACAG
Seq C2 exon
GCCGGACCTGATAGACATGAATACTGTTGCTGTTCAAAGCAACCTTGCAAATTTAGAGCACGCTTTCTATGTAGCAGAAAAAATCGGTGTTATAAGACTTCTGGATCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237-'7-6,'7-5,10-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(34.5=100)
A:
PF0030726=CH=PU(39.2=71.4)
C2:
PF0030726=CH=FE(37.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATGATGACATAACAGATGGAAA
R:
TCAGGATCCAGAAGTCTTATAACACC
Band lengths:
186-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]