RnoEX0030003 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38060238-38094520:-
Coord C1 exon
chr9:38094428-38094520
Coord A exon
chr9:38076236-38076402
Coord C2 exon
chr9:38060238-38060350
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTCCGTTATATTTAGATA
3' ss Score
8.5
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTGAAGTTAGTGAACATTAGGAATGATGACATAACAGATGGGAACCCCAAGCTGACGTTGGGGTTGATATGGACAATAATTCTGCACTTCCAG
Seq A exon
ATATCTGACATCCATGTCACCGGAGAGTCAGAGGACATGTCTGCGAAAGAAAGGTTGCTGCTGTGGACACAGCAGGCGACAGAAGGTTATGCCGGAGTGCGGTGTGAAAACTTCACTACCTGCTGGAGAGATGGGAAGCTATTTAATGCCATCATTCATAAATACAG
Seq C2 exon
GCCGGACCTGATAGACATGAATACTGTTGCTGTTCAAAGCAACCTTGCGAATTTAGAGCATGCTTTTTATGTAGCTGAAAAAATCGGTGTGATCAGACTTCTGGACCCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207-'15-10,'15-7,18-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.5=100)
A:
PF0030726=CH=PU(39.2=71.4)
C2:
PF0030726=CH=FE(37.3=100)
Main Skipping Isoform:
ENSRNOT00000044452fB4502
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTTAGTGAACATTAGGAATGA
R:
TCGGGGTCCAGAAGTCTGATC
Band lengths:
204-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]