GgaEX6031943 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89759246-89792994:+
Coord C1 exon
chr3:89759246-89759338
Coord A exon
chr3:89777448-89777614
Coord C2 exon
chr3:89792882-89792994
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTATATTCATTGTATTTTAGATA
3' ss Score
8.74
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTGAAACTGGTCAACATTAGGAATGATGACATAACAGATGGGAATCCCAAGTTGACTTTGGGGTTGATATGGACCATAATTTTGCACTTTCAG
Seq A exon
ATATCTGATATCCATGTTACTGGAGAGTCAGAGGACATGTCTGCTAAAGAAAGATTGCTCCTGTGGTCACAGCAGACAACTGAGGGTTATGCTGGAATCCGTTGTGAAAATTTCACTACCTGCTGGCGTGATGGAAGATTATTTAATGCCATCATTCATAAATACAG
Seq C2 exon
GCCGGACCTGATAGACATGAATACCGTTGCTGTTCAAAGCAACCTTGCAAATTTAGAACATGCTTTTTTTGTAGCAGAAAAACTTGGTGTTGCCAGACTTCTGGATCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'7-7,'7-6,9-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(34.1=100)
A:
PF0030726=CH=PU(39.2=71.4)
C2:
PF0030726=CH=FE(37.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAACTGGTCAACATTAGGAATGA
R:
GGCAACACCAAGTTTTTCTGCT
Band lengths:
187-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]