MmuEX0015740 @ mm10
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34117432-34152314:+
Coord C1 exon
chr1:34117432-34117524
Coord A exon
chr1:34135090-34135256
Coord C2 exon
chr1:34152202-34152314
Length
167 bp
Sequences
Splice sites
3' ss Seq
GATGCTTCCGTTATATTTAGATA
3' ss Score
7.44
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGAAGTTGGTGAACATCAGAAATGATGACATAACAGATGGAAATCCTAAGCTGACTTTGGGGTTAATATGGACAATAATTCTGCACTTTCAG
Seq A exon
ATATCTGACATCCATGTCACTGGAGAGTCAGAGGACATGTCTGCGAAAGAAAGGCTGCTCCTGTGGACACAGCAGGCGACAGAAGGCTATGCTGGGGTGCGGTGTGAAAACTTCACTACCTGCTGGAGAGATGGGAAACTATTCAATGCCATCATTCATAAATACAG
Seq C2 exon
GCCGGACCTGATAGACATGAATACTGTTGCTGTTCAAAGCAACCTTGCAAATTTAGAGCATGCTTTTTATGTAGCTGAAAAAATCGGTGTTATCAGACTTCTGGACCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(29.7=100)
A:
PF0030726=CH=PU(39.2=71.4)
C2:
PF0030726=CH=FE(37.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTTGGTGAACATCAGAAA
R:
CTTCAGGGTCCAGAAGTCTGA
Band lengths:
206-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types