DreEX6059653 @ danRer10
Exon Skipping
Gene
ENSDARG00000102406 | si:ch211-165e15.1
Description
si:ch211-165e15.1 [Source:ZFIN;Acc:ZDB-GENE-081028-59]
Coordinates
chr13:1299803-1387087:+
Coord C1 exon
chr13:1299803-1366696
Coord A exon
chr13:1386573-1386739
Coord C2 exon
chr13:1386975-1387087
Length
167 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTTTTTCTGTGCAGATC
3' ss Score
11.66
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAGCGAAGAGTATTAAATAGTAGTAAATATGCTGCAAAATGTGGCCAATGTTACCGGCTGAATCCTAAAGTGGCGATAAGGTCTTAAAATGTTTGGAAAGAGGCTTTAAACAAGTGTTGATTTTCACTCTCTGATTCCTGTATTGCACCTGAAGGAACATTACAAATGCATGAAAAAAAGCTTCATTGCAGATTGTTGCAAAGGGCTGAGTTTAACCAAACAAATGAAGTTGAACATGACTGCATTTAATTTGTTTGTTTAAATTCAGCCCATGTAAAATGTTTGCAACCACTTACCTTAACATTTTTCAGTGTAGAGCCTTGTGCATTATGTCTTCATGATTGTGCATGATCGTGTTATGATATATCACTCATCAGTATTTAACCATGACCATATTATTTATCCAGGTCAAACTGGTGAACATCAGGAACGACGACATAACAGATGGAAACCCAAAGCTGACACTGGGATTAATATGGACCATAATTCTGCACTTTCAG
Seq A exon
ATCTCAGAAATTCACGTGACAGGCGAATCCGAGGACATGACGGCCAAGGAGAGGCTTCTGCTGTGGTCCAAGCAGATGACTGAAGGATACGTCGGGGTCCGCTGCGACAACTTCACTACCTCCTGGAGAGACGGACGCCTCTTTAACGCCATCATCCATAAGTACAG
Seq C2 exon
GCCTGATCTGGTGGACATGAGCAGAGTCTCGGCACAAACCAGCAGATCTAACCTGGAGCAGGCGTTCGGTGTGGCGGAGCAGCTCGGTGTGGCTCGACTGCTGGATCCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102406-'13-13,'13-12,16-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0030726=CH=PU(39.2=71.4)
C2:
PF0030726=CH=FE(37.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTGTAGAGCCTTGTGCA
R:
TAGATCTGCTGGTTTGTGCCG
Band lengths:
244-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]