BtaEX6096846 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000601 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr23:7294476-7294900:-
Coord C1 exon
chr23:7294793-7294900
Coord A exon
chr23:7294648-7294701
Coord C2 exon
chr23:7294476-7294529
Length
54 bp
Sequences
Splice sites
3' ss Seq
CGGTCCCTTCAAATCTGCAGGGT
3' ss Score
6.43
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGGGATCCTGGTGCTGTGGGCGCCCCAGGGAAGACAGGCCCTGTGGGTCCTGCAGGCCCAGCAGGAAAGCCTGGTCCTGATGGCCTGAGAGGTCTCCCTGGCTCAGTG
Seq A exon
GGTCAGCAAGGCCGTCCCGGGGCCACAGGCCAGGCTGGGCCTCCAGGCCCTGTG
Seq C2 exon
GGACCCCCAGGGCTGCCTGGCCTCCGGGGCGACACTGGGGCCAAGGGCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000601-'59-59,'59-58,60-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGGAAGACAGGCCC
R:
CCCTTGGCCCCAGTGTCG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]